I'm not sure about the sensors but the top is a replace not repair situation. I just had to have mine replaced last week because a stupid mangy stray cat jumped thru my rear window (he was fat). You have a few options. I don't believe that anyone has come up with a long term glue the window in fix, so that is out. Glue might work up north but here in the south our tops take a huge beating from the sun, heat & humidity.
Option 1 is to go to a local top repair company - they can't fix the seal, but they can replace the rear window on your top with a plastic one. I hate this look personally, but it is your car & budget.
Option 2 is to get a new after market top. These can look really great, almost like factory, for less money. I know that we had a forum member get their car done for about $1400.
Option 3 is a brand new OEM top from Chrysler. These had been almost impossible to find but in my search for a new top on mine I found a dealer that has some. His e-mail is
davidcogle@greenway.com. My top was about $2000 installed at the dealership. Mine was an insurance claim so I had it done at the dealership (my deductible was the same for any of the options). The good news is that it only took a few hours to swap out the top & it looks great!
I hope you have some luck getting your car fixed .... I wish I knew about the temp sensor for you.