There is a series of driving sequences that you can do that gets all the boxes ticked in the most efficient way.
It is on this forum at least twice, or you can look on the web for it. I used the Chrysler steps and it worked.
I initially tried just driving around like normal but one system would not reset, I think it was something to do with the carbon filter emissions.
An OBD reader comes in handy as the good ones tell you if the system is set or not.