The car needs to be running while doing the three recommended manual opens and closes.
I did 6 manual to make sure.
https://www.crossfireforum.org/forum...tml#post945786
This is a great thread for your issue very descriptive.
As far as whats going on with yours.
DO the windows roll down when you turn the d ring and push the top up?
If they do check the roof up sensor described in the thread listed above.
If not check the sensor in front of the passenger embedded in the windshield.
Hope this helped.