Well just when you think it's all over...
It's been in the shop a week now and they had a Chrysler Mechanic come down and check it out. Seems now they believe it's the Scan Module (whatever that is) and ordered a new one of those to see if that would finally fix the problem. They installed the Scan Module today and are keeping an eye on it untill tomorrow to see if the alarm goes off again. Fingers Crossed!
Side Note: The alarm its self isn’t going off any more but the Fog Lights/Parking Lights/Tail Lights seem to flash at random and for various amounts off time.