Sorry both of you are having problems. Both of those mods were important to my 11 second timeslips. The tune even more important. 32Krazy! those are insane AFR's and hope your tune get's worked out. Good thing your datalogging.
Kolevski- I would unplug your battery and let the ecu reset. Then take the car out and drive it about 45 mins with normal spirited driving for the ecu to adjust. I always did this when I added a part. Hope this helps, and get on the phone with InMotion as well. The shifting issue seems more like the ecu hasn't adapted. Still suggest as we've talked before to datalog.