Well I got my car back and it is time for a test drive, I'll give feed back later but preliminary findings is that the fluid was low and now when I put it into drive, there is no hesitation and no clunk. It is much smoother now. Also they cleared a TCU fault "incorrect gear ratio". They were very good about the price as they felt some what responisible for not filling the trany to the proper level in the first place.

Cross your fingers.