Not sure if this will help but I had trouble getting my top down. I had the battery disconnected for awhile and when i reconnected I was just getting the beeps when I tried. Not sure what happened. When i unlatched the the top the windows went down but nothing after that.
So I put the top down manually and it went back up by itself and now goes down by itself. I found this suggestion from a member on this forum so just passing it along. I also did this with the car running.