Originally Posted by pizzaguy

"Roof won't finalize" - the terminology is "when putting the top up, the cycle won't complete, but it does complete when putting top down."

And that leads to two 'most likely' suspects in my mind, so:

Put top up.
Put windows up.
Turn D handle - if the windows do not go down, the switch in the frame is bad. If the windows DO go down, my guess would be the travel sensor on the bow latch cylinder, that is adjustable*, and has caused this before.

*I swear it is adjustable, but I may be wrong. It may be that the sensor is just BAD.