Can anyone tell me if our windows drop slightly to miss the rubber when closing the door as they are frameless?

 

They do not, the seal rides up the inside glass and rolls back down on the outside of the glass.
There is adjustment for this which is detailed in the Service Manual, I had to do my 2004 coupe to get a tighter seal.
From what I can see the window tinting on my car allows for this as the glass is tint free for about 1/8”, maybe all tinted windows are like this though.